This manuscript (permalink) was automatically generated from habi/InMiceMethodPaper@e1e01e7 on July 2, 2025.

Authors

• David Haberthür
  0000-0003-3388-9187 · habi · @habi@mastodon.social
  Institute of Anatomy, University of Bern, Baltzerstrasse 2, CH-3012 Bern, Switzerland

• Jane Doe ^✉
  0000-0001-2345-6789 · janedoe
  Exemplary institute, Some University, 123 Example St, City, Country · Funded by some exemplary institution (Grant 123-456-789)

Abstract

Background & Summary

We scanned a lot of different mouse strains and so-called hybrids, both male and female. One scan for each strain, each hybrid and each sex gives already 90 samples.

Methods

Sample preparation

• Mice were anesthesized
• Mice were decapitated
• Mouse skulls were stored in …

Tomographic imaging

• SkyScan 1272 with sample changer
• All log files available here: https://github.unibe.ch/david-haberthuer/InMice/tree/main/logfiles

Image processing

• Jupyter¹ notebooks, available here: https://github.unibe.ch/david-haberthuer/InMice/, for reproducible research.

Data Records

Technical Validation

Usage Notes

Code Availability

• Jupyter notebooks

References

Author Contributions

Contributor Roles Taxonomy (CRediT), as defined in²:

• Conceptualization: Jane Doe
• Data curation: David Haberthür, Jane Doe
• Formal analysis: David Haberthür, Jane Doe
• Funding acquisition: Jane Doe
• Investigation: David Haberthür, Jane Doe
• Methodology: David Haberthür, Jane Doe
• Project administration: David Haberthür, Jane Doe
• Resources: Jane Doe
• Software: David Haberthür, Jane Doe
• Supervision: Jane Doe
• Validation: David Haberthür, Jane Doe
• Visualization: David Haberthür, Jane Doe
• Writing – original draft: David Haberthür, Jane Doe
• Writing – review & editing: David Haberthür, Jane Doe

Competing Interests

Acknowledgements

We are grateful to the Microscopy Imaging Center of the University of Bern for their infrastructural support. We also thank the manubot project³ for facilitating collaborative writing of this manuscript.